Resolve "Controller/Makefile uses older versions than the one in the top level"

Fabian Seidlrequested to merge
308-controller-makefile-uses-older-versions-than-the-one-in-the-top-level into master

Description

This also includes changes to the Makefile structure for cleaning purposes. Calls on the functions should work like they used to.

Related to #308

Edited by Fabian Seidl

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